Learning Antimicrobial Resistance (AMR) genes with Bioconductor

Instead of flashcards, we Rube Goldberg’d this with Bioconductor! Analyzed 3,280 E. coli genomes from NCBI, detecting ESBL genes in 84.4% of samples. CTX-M-15 was most common. Helped us understand gene nomenclature and sequence analysis! 📊🔬

Motivation

I’ve always had a hard time learning and remembering all these genes for antimicrobial …