Introduction
A major update to ggplot2 (version 4.0.0) is expected around mid-to-late July 2025. It brings a significant internal change, replacing most of the S3 backend with the newer S7 object system. While this improves long-term maintainability and extensibility, it may break Bioconductor packages that depend on ggplot2, especially those that customise …

Continue reading: Bioconductor and ggplot2 4.0.0: What’s Changing and How to …